Submitted data error checks
0. Instructions for submitters
Submitters should use this file to check for problems with submitted data. Send either a list of problems or confirmation that everything looks OK to Sasha by email. Be sure to reference the dataset version and file creation date/time when doing so. These are:
## Version: 2.47## [1] "Date/time: 2024-04-04 14:54:03.969221"Each of these html files contains a summary of the data from a single submitted spreadsheet file. The html name is based on the name of the submitted file. Use the details below to check:
- Institute abbreviation, submitter and contributor names
- The plot location(s), using the map zoom and pan features if needed
- For problems in the first sections; “OK” means there are no problems in a particular section, “warning” is something that should be checked (but might be OK), “error” is a problem that needs to be addressed
- For numeric values outside the expected range in the “Value checks” section
- Variables with missing values–are there any missing that you thought you included?
- Plots of flux, cumulative emission over time, and final cumulative emission for strange patterns, unexpectedly high or low values
- Plots of weather data for appropriate differences between plots and expected diurnal or other patterns
- Plots of manure and application data for correct values
Finally, the numeric summary at the end might provide details that can help in pinpointing problems, but typically does not need to be checked.
1. Submitter
| inst.abbrev | submitter | version | date |
|---|---|---|---|
| UNIMI | Marco Carozzi | 1 | 2022-08-04 |
2. Contributors
| contributor | institute |
|---|---|
| Marco Carozzi | INRAE, Thiverval-Grignon, France |
3. File and directory names
## [1] "../../data-submitted/03/UNINI"## [1] "../../data-submitted/03/UNINI/ALFAM2_template_6.1_ARMOSA2013_V1.xlsx"4. Location
5.Keys and codes
Codes in Treatments sheet
## OK## OKCodes in Plots sheet
## OK## OKCodes in Emission sheet
## OK## OKCode merge check (matching project, experiment, field, plot, treatment)
## OK## OK## OK## OK## OK6. Publication info
Check for missing codes
## OK## OKComplete citations given
## OK## OK7. Emission sheet
Duplicated intervals
## OKMissing incorporation time
## OKDelay after application
## OKMissing or double interval number
## OK
## OK
## OK
## OKMissing time between intervals
## OK
## OK
## OK
## OKMeasurement method and units
Measurement technique:
| Method | Frequency |
|---|---|
| AGM | 284 |
| bLS | 568 |
| EC | 284 |
Measurement technique classification:
| Classification | Frequency |
|---|---|
| micro met | 1136 |
Emission units and conversion factors.
| Original unit | Conversion factor applied | Final unit |
|---|---|---|
| ng NH3 /m2 /s | 2.96e-05 | kg N/ha-hr |
7. Value checks
Check to see if submitted values are within a reasonable range.
Weather
## wind : OK
## rain.rate : OK
## air.temp : OK
## soil.temp : No values to check.
## soil.temp.surf : No values to check.
## air.temp.z : OK
## wind.z : OKManure and application
## man.stor : No values to check.
## man.dm : OK
## man.vs : No values to check.
## man.tkn : OK
## man.tan : OK
## man.tic : No values to check.
## man.ua : No values to check.
## man.vfa : No values to check.
## man.ph : OK
## app.rate : OK
## crop.z : OKEmission
## j.NH3 : OK
## e.int : OK
## e.rel : OK8. Missing values
Check for missing values.
All variables
## Some values missing:
## Table below has number of missing observations by variable:
## pub.id soil.type man.trt2 man.trt3 man.stor
## 1136 1136 1136 1136 1136
## man.vs man.tic man.ua man.vfa time.incorp
## 1136 1136 1136 1136 284
## dist.inj furrow.z furrow.w lai notes.plot
## 1136 1136 1136 1136 284
## bg.dl soil.temp soil.temp.z soil.temp.surf notes.int
## 1136 1136 1136 1136 1135
## pub.info soil.type2 exper2 rep2
## 1136 1136 1136 1136Application method and measurement method
## OK## OK9. Plots
Calculated cumulative emission
Cumulative emission. Missing values imputed (linear interpolation). Numeric labels show position of data in data file: row in the “Plots” sheet and first row in the “Emission” sheet. Labels in center of the first plot have measurement method, manure source, and application method. The same emission data are plotted a few different ways to facilitate checking for problems, e.g., comparing plot to each other or checking application dates. The same colors should be be used for particular field plots throughout this section.
Final cumulative emission
## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
Relative versus absolute emission
Flux
Weather data
Manure and application
| institute | proj | exper | field | plot | man.dm | man.ph | man.tan | app.rate | tan.app |
|---|---|---|---|---|---|---|---|---|---|
| UNIMI | ARMOSA | LAND_13 | SIC-13 | 1 | 6.49 | 8.36 | 2.205 | 44.968 | 99.15444 |
| UNIMI | ARMOSA | LAND_13 | SIC-13 | 1 | 6.49 | 8.36 | 2.205 | 44.968 | 99.15444 |
| UNIMI | ARMOSA | LAND_13 | SIC-13 | 1 | 6.49 | 8.36 | 2.205 | 44.968 | 99.15444 |
| UNIMI | ARMOSA | LAND_13 | SS-13 | 1 | 6.49 | 8.36 | 2.205 | 43.600 | 96.13800 |
10. dfsumm summary
Plot-level data
##
## 4 rows and 204 columns
## 4 unique rows
## pub.id
## Class logical
## Minimum <NA>
## Maximum <NA>
## Mean <NA>
## Unique (excld. NA) 0
## Missing values 4
## Sorted <NA>
##
## cpmid
## Class character
## Minimum D:1.I:UNIMI.Pr:ARMOSA.F:../../data-submitted/03/UNINI/ALFAM2_template_6.1_ARMOSA2013_V1.xlsx.E:LAND_13.F:SIC-13.P:1.T:SIC-13_EC.R:0.R2:.T:2013-06-19 09:10:00.M:EC150 cm height
## Maximum D:1.I:UNIMI.Pr:ARMOSA.F:../../data-submitted/03/UNINI/ALFAM2_template_6.1_ARMOSA2013_V1.xlsx.E:LAND_13.F:SS-13.P:1.T:SS-13_IDM.R:0.R2:.T:2013-06-19 15:05:00.M:bLS150 cm height
## Mean <NA>
## Unique (excld. NA) 4
## Missing values 0
## Sorted TRUE
##
## proj exper field plot rep plot.area
## Class character character character character character numeric
## Minimum ARMOSA LAND_13 SIC-13 1 0 10000
## Maximum ARMOSA LAND_13 SS-13 1 0 39800
## Mean <NA> <NA> <NA> <NA> <NA> 32400
## Unique (excld. NA) 1 1 2 1 1 2
## Missing values 0 0 0 0 0 0
## Sorted TRUE TRUE TRUE TRUE TRUE FALSE
##
## lat long country topo clay silt sand
## Class numeric numeric character character numeric numeric numeric
## Minimum 45.3 9.26 IT Flat 13.5 48.9 33.1
## Maximum 45.3 9.27 IT Flat 18.1 51.5 35
## Mean 45.3 9.27 <NA> <NA> 16.9 49.5 33.6
## Unique (excld. NA) 2 2 1 1 2 2 2
## Missing values 0 0 0 0 0 0 0
## Sorted FALSE TRUE TRUE TRUE FALSE TRUE TRUE
##
## oc soil.type soil.water soil.water.v soil.moist soil.ph
## Class numeric logical numeric numeric character numeric
## Minimum 2.12 <NA> 0.146 20.4 Wet 7
## Maximum 2.47 <NA> 0.157 20.9 Wet 7.65
## Mean 2.38 <NA> 0.154 20.5 <NA> 7.49
## Unique (excld. NA) 2 0 2 2 1 2
## Missing values 0 4 0 0 0 0
## Sorted FALSE <NA> FALSE TRUE TRUE FALSE
##
## soil.dens crop.res till man.source man.source.det
## Class numeric character character character character
## Minimum 1.3 No No cat Dairy
## Maximum 1.43 No No cat Dairy
## Mean 1.33 <NA> <NA> <NA> <NA>
## Unique (excld. NA) 2 1 1 1 1
## Missing values 0 0 0 0 0
## Sorted TRUE TRUE TRUE TRUE TRUE
##
## man.bed man.con man.trt1 man.trt2 man.trt3
## Class character character character logical logical
## Minimum Straw Slurry Anaerobic digestion <NA> <NA>
## Maximum Straw Slurry Anaerobic digestion <NA> <NA>
## Mean <NA> <NA> <NA> <NA> <NA>
## Unique (excld. NA) 1 1 1 0 0
## Missing values 0 0 0 4 4
## Sorted TRUE TRUE TRUE <NA> <NA>
##
## man.stor man.dm man.vs man.tkn man.tan man.tic man.ua
## Class logical numeric logical numeric numeric logical logical
## Minimum <NA> 6.49 <NA> 4.93 2.2 <NA> <NA>
## Maximum <NA> 6.49 <NA> 4.93 2.2 <NA> <NA>
## Mean <NA> 6.49 <NA> 4.93 2.2 <NA> <NA>
## Unique (excld. NA) 0 1 0 1 1 0 0
## Missing values 4 0 4 0 0 4 4
## Sorted <NA> TRUE <NA> TRUE TRUE <NA> <NA>
##
## man.vfa man.ph app.start app.end
## Class logical numeric POSIXct, POSIXt POSIXct, POSIXt
## Minimum <NA> 8.36 2013-06-19 09:10:00 2013-06-19 13:30:00
## Maximum <NA> 8.36 2013-06-19 15:05:00 2013-06-19 16:05:00
## Mean <NA> 8.36 2013-06-19 10:38:45 2013-06-19 14:08:45
## Unique (excld. NA) 0 1 2 2
## Missing values 4 0 0 0
## Sorted <NA> TRUE TRUE TRUE
##
## app.method app.rate app.rate.unit incorp time.incorp
## Class character numeric character character numeric
## Minimum bc 43.6 m3/ha none 0.0167
## Maximum bc 45 m3/ha shallow 0.0167
## Mean <NA> 44.6 <NA> <NA> 0.0167
## Unique (excld. NA) 1 2 1 2 1
## Missing values 0 0 0 0 1
## Sorted TRUE FALSE TRUE FALSE TRUE
##
## man.area dist.inj furrow.z furrow.w crop crop.z
## Class numeric logical logical logical character numeric
## Minimum 100 <NA> <NA> <NA> grass 15
## Maximum 100 <NA> <NA> <NA> grass 25
## Mean 100 <NA> <NA> <NA> <NA> 17.5
## Unique (excld. NA) 1 0 0 0 1 2
## Missing values 0 4 4 4 0 0
## Sorted TRUE <NA> <NA> <NA> TRUE TRUE
##
## crop.area lai notes.plot row.in.file.plot institute
## Class numeric logical character numeric character
## Minimum 50 <NA> . 5 UNIMI
## Maximum 50 <NA> . 6 UNIMI
## Mean 50 <NA> <NA> 5.25 <NA>
## Unique (excld. NA) 1 0 1 2 1
## Missing values 0 4 1 0 0
## Sorted TRUE <NA> TRUE TRUE TRUE
##
## sub.period
## Class numeric
## Minimum 3
## Maximum 3
## Mean 3
## Unique (excld. NA) 1
## Missing values 0
## Sorted TRUE
##
## file
## Class character
## Minimum ../../data-submitted/03/UNINI/ALFAM2_template_6.1_ARMOSA2013_V1.xlsx
## Maximum ../../data-submitted/03/UNINI/ALFAM2_template_6.1_ARMOSA2013_V1.xlsx
## Mean <NA>
## Unique (excld. NA) 1
## Missing values 0
## Sorted TRUE
##
## treat meas.tech meas.tech.det app.start.orig
## Class character character character character
## Minimum SIC-13_EC AGM 150 cm height 19-06-2013 09:10
## Maximum SS-13_IDM EC 30, 70, 150 cm height 19-06-2013 15:05
## Mean <NA> <NA> <NA> <NA>
## Unique (excld. NA) 4 3 2 2
## Missing values 0 0 0 0
## Sorted TRUE FALSE FALSE TRUE
##
## app.end.orig
## Class character
## Minimum 19-06-2013 13:30
## Maximum 19-06-2013 16:05
## Mean <NA>
## Unique (excld. NA) 2
## Missing values 0
## Sorted TRUE
##
## cpid
## Class character
## Minimum D:1.I:UNIMI.Pr:ARMOSA.F:../../data-submitted/03/UNINI/ALFAM2_template_6.1_ARMOSA2013_V1.xlsx.E:LAND_13.F:SIC-13.P:1.T:SIC-13_EC.R:0.R2:.T:2013-06-19 09:10:00
## Maximum D:1.I:UNIMI.Pr:ARMOSA.F:../../data-submitted/03/UNINI/ALFAM2_template_6.1_ARMOSA2013_V1.xlsx.E:LAND_13.F:SS-13.P:1.T:SS-13_IDM.R:0.R2:.T:2013-06-19 15:05:00
## Mean <NA>
## Unique (excld. NA) 4
## Missing values 0
## Sorted TRUE
##
## ceid flag.plot submitter
## Class character character character
## Minimum D:1.I:UNIMI.Pr:ARMOSA.E:LAND_13 Marco Carozzi
## Maximum D:1.I:UNIMI.Pr:ARMOSA.E:LAND_13 Marco Carozzi
## Mean <NA> <NA> <NA>
## Unique (excld. NA) 1 1 1
## Missing values 0 0 0
## Sorted TRUE TRUE TRUE
##
## tan.app e.1 e.4 e.6 e.12 e.24 e.48
## Class numeric numeric numeric numeric numeric numeric numeric
## Minimum 96.1 -0.00918 -0.0474 -0.0589 -0.141 35 38.7
## Maximum 99.2 0.0232 0.0791 0.106 0.213 45.8 61.4
## Mean 98.4 0.00137 -0.00461 -0.00363 0.0473 38.6 45.5
## Unique (excld. NA) 2 4 4 4 4 4 4
## Missing values 0 0 0 0 0 0 0
## Sorted FALSE FALSE FALSE FALSE FALSE FALSE FALSE
##
## e.72 e.96 e.168 e.final e.tot e.cum.1 e.cum.4
## Class numeric numeric numeric numeric numeric numeric numeric
## Minimum 39.1 39.3 <NA> 39.5 39.5 -0.00918 -0.0474
## Maximum 65.1 66.6 <NA> 68.5 68.5 0.0232 0.0791
## Mean 46.7 47.2 <NA> 47.8 47.8 0.00137 -0.00461
## Unique (excld. NA) 4 4 0 4 4 4 4
## Missing values 0 0 4 0 0 0 0
## Sorted FALSE FALSE <NA> FALSE FALSE FALSE FALSE
##
## e.cum.6 e.cum.12 e.cum.24 e.cum.48 e.cum.72 e.cum.96
## Class numeric numeric numeric numeric numeric numeric
## Minimum -0.0589 -0.141 35 38.7 39.1 39.3
## Maximum 0.106 0.213 45.8 61.4 65.1 66.6
## Mean -0.00363 0.0473 38.6 45.5 46.7 47.2
## Unique (excld. NA) 4 4 4 4 4 4
## Missing values 0 0 0 0 0 0
## Sorted FALSE FALSE FALSE FALSE FALSE FALSE
##
## e.cum.168 e.cum.final e.cum.tot e.rel.1 e.rel.4
## Class numeric numeric numeric numeric numeric
## Minimum <NA> 39.5 39.5 -9.26e-05 -0.000478
## Maximum <NA> 68.5 68.5 0.000241 0.000822
## Mean <NA> 47.8 47.8 1.57e-05 -4.02e-05
## Unique (excld. NA) 0 4 4 4 4
## Missing values 4 0 0 0 0
## Sorted <NA> FALSE FALSE FALSE FALSE
##
## e.rel.6 e.rel.12 e.rel.24 e.rel.48 e.rel.72 e.rel.96
## Class numeric numeric numeric numeric numeric numeric
## Minimum -0.000594 -0.00142 0.353 0.39 0.395 0.396
## Maximum 0.0011 0.00222 0.476 0.639 0.677 0.693
## Mean -2.82e-05 0.000494 0.393 0.464 0.477 0.481
## Unique (excld. NA) 4 4 4 4 4 4
## Missing values 0 0 0 0 0 0
## Sorted FALSE FALSE FALSE FALSE FALSE FALSE
##
## e.rel.168 e.rel.final e.rel.tot rain.1 rain.4 rain.6
## Class numeric numeric numeric numeric numeric numeric
## Minimum <NA> 0.398 0.398 0 0 0
## Maximum <NA> 0.712 0.712 0 0 0
## Mean <NA> 0.487 0.487 0 0 0
## Unique (excld. NA) 0 4 4 1 1 1
## Missing values 4 0 0 0 0 0
## Sorted <NA> FALSE FALSE TRUE TRUE TRUE
##
## rain.12 rain.24 rain.48 rain.72 rain.96 rain.168 rain.final
## Class numeric numeric numeric numeric numeric numeric numeric
## Minimum 0 0 0 0 0 <NA> 3.2
## Maximum 0 0 0 0 0 <NA> 3.2
## Mean 0 0 0 0 0 <NA> 3.2
## Unique (excld. NA) 1 1 1 1 1 0 1
## Missing values 0 0 0 0 0 4 0
## Sorted TRUE TRUE TRUE TRUE TRUE <NA> TRUE
##
## rain.tot air.temp.1 air.temp.4 air.temp.6 air.temp.12
## Class numeric numeric numeric numeric numeric
## Minimum 3.2 25.7 24.9 24.3 25.1
## Maximum 3.2 25.7 24.9 24.3 25.1
## Mean 3.2 25.7 24.9 24.3 25.1
## Unique (excld. NA) 1 1 1 1 1
## Missing values 0 0 0 0 0
## Sorted TRUE TRUE TRUE TRUE TRUE
##
## air.temp.24 air.temp.48 air.temp.72 air.temp.96 air.temp.168
## Class numeric numeric numeric numeric numeric
## Minimum 28.9 27.6 26.5 25.8 24.8
## Maximum 28.9 27.6 26.5 25.8 24.8
## Mean 28.9 27.6 26.5 25.8 24.8
## Unique (excld. NA) 1 1 1 1 1
## Missing values 0 0 0 0 0
## Sorted TRUE TRUE TRUE TRUE TRUE
##
## air.temp.mn wind.1 wind.4 wind.6 wind.12 wind.24 wind.48
## Class numeric numeric numeric numeric numeric numeric numeric
## Minimum 24.8 0.0612 0.198 0.223 0.363 0.613 0.722
## Maximum 24.8 0.132 0.279 0.297 0.53 0.948 1.26
## Mean 24.8 0.0789 0.218 0.242 0.405 0.697 0.857
## Unique (excld. NA) 1 2 2 2 2 2 2
## Missing values 0 0 0 0 0 0 0
## Sorted TRUE TRUE TRUE TRUE TRUE TRUE TRUE
##
## wind.72 wind.96 wind.168 wind.mn wind.2m.1 wind.2m.4
## Class numeric numeric numeric numeric numeric numeric
## Minimum 0.762 0.826 0.923 0.923 0.065 0.21
## Maximum 1.51 1.72 1.77 1.77 0.141 0.299
## Mean 0.948 1.05 1.13 1.13 0.0841 0.232
## Unique (excld. NA) 2 2 2 2 2 2
## Missing values 0 0 0 0 0 0
## Sorted TRUE TRUE TRUE TRUE TRUE TRUE
##
## wind.2m.6 wind.2m.12 wind.2m.24 wind.2m.48 wind.2m.72
## Class numeric numeric numeric numeric numeric
## Minimum 0.237 0.385 0.652 0.768 0.809
## Maximum 0.318 0.567 1.01 1.35 1.61
## Mean 0.257 0.431 0.743 0.913 1.01
## Unique (excld. NA) 2 2 2 2 2
## Missing values 0 0 0 0 0
## Sorted TRUE TRUE TRUE TRUE TRUE
##
## wind.2m.96 wind.2m.168 wind.2m.mn rad.1 rad.4 rad.6
## Class numeric numeric numeric numeric numeric numeric
## Minimum 0.878 0.981 0.981 0 0 0
## Maximum 1.84 1.89 1.89 0 0 0
## Mean 1.12 1.21 1.21 0 0 0
## Unique (excld. NA) 2 2 2 1 1 1
## Missing values 0 0 0 0 0 0
## Sorted TRUE TRUE TRUE TRUE TRUE TRUE
##
## rad.12 rad.24 rad.48 rad.72 rad.96 rad.168 rad.mn
## Class numeric numeric numeric numeric numeric numeric numeric
## Minimum 137 327 278 292 305 309 309
## Maximum 137 327 278 292 305 309 309
## Mean 137 327 278 292 305 309 309
## Unique (excld. NA) 1 1 1 1 1 1 1
## Missing values 0 0 0 0 0 0 0
## Sorted TRUE TRUE TRUE TRUE TRUE TRUE TRUE
##
## rain.rate.1 rain.rate.4 rain.rate.6 rain.rate.12
## Class numeric numeric numeric numeric
## Minimum 0 0 0 0
## Maximum 0 0 0 0
## Mean 0 0 0 0
## Unique (excld. NA) 1 1 1 1
## Missing values 0 0 0 0
## Sorted TRUE TRUE TRUE TRUE
##
## rain.rate.24 rain.rate.48 rain.rate.72 rain.rate.96
## Class numeric numeric numeric numeric
## Minimum 0 0 0 0
## Maximum 0 0 0 0
## Mean 0 0 0 0
## Unique (excld. NA) 1 1 1 1
## Missing values 0 0 0 0
## Sorted TRUE TRUE TRUE TRUE
##
## rain.rate.168 rain.rate.mn rh.1 rh.4 rh.6 rh.12
## Class numeric numeric numeric numeric numeric numeric
## Minimum 0.0225 0.0225 78.3 82 85.8 82.5
## Maximum 0.0225 0.0225 78.3 82 85.8 82.5
## Mean 0.0225 0.0225 78.3 82 85.8 82.5
## Unique (excld. NA) 1 1 1 1 1 1
## Missing values 0 0 0 0 0 0
## Sorted TRUE TRUE TRUE TRUE TRUE TRUE
##
## rh.24 rh.48 rh.72 rh.96 rh.168 rh.mn
## Class numeric numeric numeric numeric numeric numeric
## Minimum 65.3 66.5 65.3 65.1 65.5 65.5
## Maximum 65.3 66.5 65.3 65.1 65.5 65.5
## Mean 65.3 66.5 65.3 65.1 65.5 65.5
## Unique (excld. NA) 1 1 1 1 1 1
## Missing values 0 0 0 0 0 0
## Sorted TRUE TRUE TRUE TRUE TRUE TRUE
##
## first.row.in.file.int last.row.in.file.int n.ints dt1
## Class numeric numeric integer numeric
## Minimum 5 288 284 0.5
## Maximum 857 1140 284 0.5
## Mean 431 714 284 0.5
## Unique (excld. NA) 4 4 1 1
## Missing values 0 0 0 0
## Sorted TRUE TRUE TRUE TRUE
##
## j.rel1 j.NH31 dt.min dt.max ct.min ct.max
## Class numeric numeric numeric numeric numeric numeric
## Minimum -7.48e-05 -0.00741 0.5 0.5 0.5 142
## Maximum 0.000278 0.0268 0.5 0.5 0.5 142
## Mean 1.94e-05 0.00171 0.5 0.5 0.5 142
## Unique (excld. NA) 4 4 1 1 1 1
## Missing values 0 0 0 0 0 0
## Sorted FALSE FALSE TRUE TRUE TRUE TRUE
##
## t.start.p t.end.p air.temp.z
## Class POSIXct, POSIXt POSIXct, POSIXt numeric
## Minimum 2013-06-18 21:00:00 2013-06-24 18:30:00 1.8
## Maximum 2013-06-18 21:00:00 2013-06-24 18:30:00 1.8
## Mean 2013-06-18 21:00:00 2013-06-24 18:30:00 1.8
## Unique (excld. NA) 1 1 1
## Missing values 0 0 0
## Sorted TRUE TRUE TRUE
##
## soil.temp.z wind.z wind.loc far.loc pub.info soil.type2
## Class logical numeric character numeric logical logical
## Minimum <NA> 1.5 Plot 0 <NA> <NA>
## Maximum <NA> 1.5 Plot 0 <NA> <NA>
## Mean <NA> 1.5 <NA> 0 <NA> <NA>
## Unique (excld. NA) 0 1 1 1 0 0
## Missing values 4 0 0 0 4 4
## Sorted <NA> TRUE TRUE TRUE <NA> <NA>
##
## exper2 rep2 acid meas.tech.orig meas.tech2 crop.orig
## Class logical logical logical character character character
## Minimum <NA> <NA> FALSE AGM micro met Grass
## Maximum <NA> <NA> FALSE EC micro met Grass
## Mean <NA> <NA> 0 TRUE <NA> <NA> <NA>
## Unique (excld. NA) 0 0 1 3 1 1
## Missing values 4 4 0 0 0 0
## Sorted <NA> <NA> TRUE FALSE TRUE TRUE
##
## man.source.orig app.method.orig app.method2 incorp.orig
## Class character character character character
## Minimum Cattle Broadcast bc None
## Maximum Cattle Broadcast bc Shallow
## Mean <NA> <NA> <NA> <NA>
## Unique (excld. NA) 1 1 1 2
## Missing values 0 0 0 0
## Sorted TRUE TRUE TRUE FALSE
##
## date.start
## Class Date
## Minimum 2013-06-18
## Maximum 2013-06-18
## Mean <NA>
## Unique (excld. NA) 1
## Missing values 0
## Sorted TRUE
## Interval-level emission data
##
## 1136 rows and 138 columns
## 1136 unique rows
## cpmid
## Class character
## Minimum D:1.I:UNIMI.Pr:ARMOSA.F:../../data-submitted/03/UNINI/ALFAM2_template_6.1_ARMOSA2013_V1.xlsx.E:LAND_13.F:SIC-13.P:1.T:SIC-13_EC.R:0.R2:.T:2013-06-19 09:10:00.M:EC150 cm height
## Maximum D:1.I:UNIMI.Pr:ARMOSA.F:../../data-submitted/03/UNINI/ALFAM2_template_6.1_ARMOSA2013_V1.xlsx.E:LAND_13.F:SS-13.P:1.T:SS-13_IDM.R:0.R2:.T:2013-06-19 15:05:00.M:bLS150 cm height
## Mean <NA>
## Unique (excld. NA) 4
## Missing values 0
## Sorted TRUE
##
## pub.id proj exper field plot rep
## Class logical character character character character character
## Minimum <NA> ARMOSA LAND_13 SIC-13 1 0
## Maximum <NA> ARMOSA LAND_13 SS-13 1 0
## Mean <NA> <NA> <NA> <NA> <NA> <NA>
## Unique (excld. NA) 0 1 1 2 1 1
## Missing values 1136 0 0 0 0 0
## Sorted <NA> TRUE TRUE TRUE TRUE TRUE
##
## treat meas.tech meas.tech.det plot.area lat
## Class character character character numeric numeric
## Minimum SIC-13_EC AGM 150 cm height 10000 45.3
## Maximum SS-13_IDM EC 30, 70, 150 cm height 39800 45.3
## Mean <NA> <NA> <NA> 32400 45.3
## Unique (excld. NA) 4 3 2 2 2
## Missing values 0 0 0 0 0
## Sorted TRUE FALSE FALSE FALSE FALSE
##
## long country topo clay silt sand oc
## Class numeric character character numeric numeric numeric numeric
## Minimum 9.26 IT Flat 13.5 48.9 33.1 2.12
## Maximum 9.27 IT Flat 18.1 51.5 35 2.47
## Mean 9.27 <NA> <NA> 16.9 49.5 33.6 2.38
## Unique (excld. NA) 2 1 1 2 2 2 2
## Missing values 0 0 0 0 0 0 0
## Sorted TRUE TRUE TRUE FALSE TRUE TRUE FALSE
##
## soil.type soil.water soil.water.v soil.moist soil.ph
## Class logical numeric numeric character numeric
## Minimum <NA> 0.146 20.4 Wet 7
## Maximum <NA> 0.157 20.9 Wet 7.65
## Mean <NA> 0.154 20.5 <NA> 7.49
## Unique (excld. NA) 0 2 2 1 2
## Missing values 1136 0 0 0 0
## Sorted <NA> FALSE TRUE TRUE FALSE
##
## soil.dens crop.res till man.source man.source.det
## Class numeric character character character character
## Minimum 1.3 No No cat Dairy
## Maximum 1.43 No No cat Dairy
## Mean 1.33 <NA> <NA> <NA> <NA>
## Unique (excld. NA) 2 1 1 1 1
## Missing values 0 0 0 0 0
## Sorted TRUE TRUE TRUE TRUE TRUE
##
## man.bed man.con man.trt1 man.trt2 man.trt3
## Class character character character logical logical
## Minimum Straw Slurry Anaerobic digestion <NA> <NA>
## Maximum Straw Slurry Anaerobic digestion <NA> <NA>
## Mean <NA> <NA> <NA> <NA> <NA>
## Unique (excld. NA) 1 1 1 0 0
## Missing values 0 0 0 1136 1136
## Sorted TRUE TRUE TRUE <NA> <NA>
##
## man.stor man.dm man.vs man.tkn man.tan man.tic man.ua
## Class logical numeric logical numeric numeric logical logical
## Minimum <NA> 6.49 <NA> 4.93 2.2 <NA> <NA>
## Maximum <NA> 6.49 <NA> 4.93 2.2 <NA> <NA>
## Mean <NA> 6.49 <NA> 4.93 2.2 <NA> <NA>
## Unique (excld. NA) 0 1 0 1 1 0 0
## Missing values 1136 0 1136 0 0 1136 1136
## Sorted <NA> TRUE <NA> TRUE TRUE <NA> <NA>
##
## man.vfa man.ph app.start app.end
## Class logical numeric POSIXct, POSIXt POSIXct, POSIXt
## Minimum <NA> 8.36 2013-06-19 09:10:00 2013-06-19 13:30:00
## Maximum <NA> 8.36 2013-06-19 15:05:00 2013-06-19 16:05:00
## Mean <NA> 8.36 2013-06-19 10:38:45 2013-06-19 14:08:45
## Unique (excld. NA) 0 1 2 2
## Missing values 1136 0 0 0
## Sorted <NA> TRUE TRUE TRUE
##
## app.method app.rate app.rate.unit incorp time.incorp
## Class character numeric character character numeric
## Minimum bc 43.6 m3/ha none 0.0167
## Maximum bc 45 m3/ha shallow 0.0167
## Mean <NA> 44.6 <NA> <NA> 0.0167
## Unique (excld. NA) 1 2 1 2 1
## Missing values 0 0 0 0 284
## Sorted TRUE FALSE TRUE FALSE TRUE
##
## man.area dist.inj furrow.z furrow.w crop crop.z
## Class numeric logical logical logical character numeric
## Minimum 100 <NA> <NA> <NA> grass 15
## Maximum 100 <NA> <NA> <NA> grass 25
## Mean 100 <NA> <NA> <NA> <NA> 17.5
## Unique (excld. NA) 1 0 0 0 1 2
## Missing values 0 1136 1136 1136 0 0
## Sorted TRUE <NA> <NA> <NA> TRUE TRUE
##
## crop.area lai notes.plot row.in.file.plot institute
## Class numeric logical character numeric character
## Minimum 50 <NA> . 5 UNIMI
## Maximum 50 <NA> . 6 UNIMI
## Mean 50 <NA> <NA> 5.25 <NA>
## Unique (excld. NA) 1 0 1 2 1
## Missing values 0 1136 284 0 0
## Sorted TRUE <NA> TRUE TRUE TRUE
##
## sub.period
## Class numeric
## Minimum 3
## Maximum 3
## Mean 3
## Unique (excld. NA) 1
## Missing values 0
## Sorted TRUE
##
## file
## Class character
## Minimum ../../data-submitted/03/UNINI/ALFAM2_template_6.1_ARMOSA2013_V1.xlsx
## Maximum ../../data-submitted/03/UNINI/ALFAM2_template_6.1_ARMOSA2013_V1.xlsx
## Mean <NA>
## Unique (excld. NA) 1
## Missing values 0
## Sorted TRUE
##
## app.start.orig app.end.orig
## Class character character
## Minimum 19-06-2013 09:10 19-06-2013 13:30
## Maximum 19-06-2013 15:05 19-06-2013 16:05
## Mean <NA> <NA>
## Unique (excld. NA) 2 2
## Missing values 0 0
## Sorted TRUE TRUE
##
## cpid
## Class character
## Minimum D:1.I:UNIMI.Pr:ARMOSA.F:../../data-submitted/03/UNINI/ALFAM2_template_6.1_ARMOSA2013_V1.xlsx.E:LAND_13.F:SIC-13.P:1.T:SIC-13_EC.R:0.R2:.T:2013-06-19 09:10:00
## Maximum D:1.I:UNIMI.Pr:ARMOSA.F:../../data-submitted/03/UNINI/ALFAM2_template_6.1_ARMOSA2013_V1.xlsx.E:LAND_13.F:SS-13.P:1.T:SS-13_IDM.R:0.R2:.T:2013-06-19 15:05:00
## Mean <NA>
## Unique (excld. NA) 4
## Missing values 0
## Sorted TRUE
##
## ceid flag.plot submitter
## Class character character character
## Minimum D:1.I:UNIMI.Pr:ARMOSA.E:LAND_13 Marco Carozzi
## Maximum D:1.I:UNIMI.Pr:ARMOSA.E:LAND_13 Marco Carozzi
## Mean <NA> <NA> <NA>
## Unique (excld. NA) 1 1 1
## Missing values 0 0 0
## Sorted TRUE TRUE TRUE
##
## tan.app interval t.start t.end
## Class numeric numeric POSIXct, POSIXt POSIXct, POSIXt
## Minimum 96.1 -36 2013-06-18 21:00:00 2013-06-18 21:30:00
## Maximum 99.2 259 2013-06-24 18:30:00 2013-06-24 18:59:59
## Mean 98.4 114 2013-06-21 19:45:00 2013-06-21 20:14:59
## Unique (excld. NA) 2 296 284 284
## Missing values 0 0 0 0
## Sorted FALSE FALSE FALSE FALSE
##
## dt bg.dl bg.val bg.unit j.NH3 j.NH3.unit
## Class numeric logical numeric character numeric character
## Minimum 0.5 <NA> 7.03 µg NH3 /m3 -0.0419 kg N/ha-hr
## Maximum 0.5 <NA> 53.1 µg NH3 /m3 16.7 kg N/ha-hr
## Mean 0.5 <NA> 19.6 <NA> 0.337 <NA>
## Unique (excld. NA) 2 0 22 1 1136 1
## Missing values 0 1136 0 0 0 0
## Sorted FALSE <NA> FALSE TRUE FALSE TRUE
##
## pH.surf air.temp air.temp.z soil.temp soil.temp.z
## Class numeric numeric numeric numeric logical
## Minimum 6.52 17.1 1.8 <NA> <NA>
## Maximum 7.92 35 1.8 <NA> <NA>
## Mean 7.48 24.8 1.8 <NA> <NA>
## Unique (excld. NA) 22 174 1 0 0
## Missing values 0 0 0 1136 1136
## Sorted FALSE FALSE TRUE <NA> <NA>
##
## soil.temp.surf rad wind wind.z MOL ustar
## Class logical numeric numeric numeric numeric numeric
## Minimum <NA> 0 0.0296 1.5 -4570 0.024
## Maximum <NA> 967 4.43 1.5 1220 0.513
## Mean <NA> 309 1.13 1.5 0.317 0.181
## Unique (excld. NA) 0 185 568 1 568 561
## Missing values 1136 0 0 0 0 0
## Sorted <NA> FALSE FALSE TRUE FALSE FALSE
##
## rl air.pres air.pres.unit rain rh wind.loc
## Class numeric numeric character numeric numeric character
## Minimum 1.17e-14 1e+05 Pa 0 28.8 Plot
## Maximum 2.55 1e+05 Pa 1.6 100 Plot
## Mean 0.259 1e+05 <NA> 0.0113 65.5 <NA>
## Unique (excld. NA) 568 1 1 3 235 1
## Missing values 0 0 0 0 0 0
## Sorted FALSE TRUE TRUE FALSE FALSE TRUE
##
## far.loc notes.int row.in.file.int j.type fromemis
## Class numeric character numeric character numeric
## Minimum 0 . 5 emission rate 1
## Maximum 0 . 1140 emission rate 1
## Mean 0 <NA> 572 <NA> 1
## Unique (excld. NA) 1 1 1136 1 1
## Missing values 0 1135 0 0 0
## Sorted TRUE TRUE TRUE TRUE TRUE
##
## t.start.orig t.end.orig j.NH3.unit.orig
## Class POSIXct, POSIXt POSIXct, POSIXt character
## Minimum 2013-06-18 21:00:00 2013-06-18 21:00:00 ng NH3 /m2 /s
## Maximum 2013-06-24 18:30:00 2013-06-24 18:30:00 ng NH3 /m2 /s
## Mean 2013-06-21 19:45:00 2013-06-21 19:45:00 <NA>
## Unique (excld. NA) 284 284 1
## Missing values 0 0 0
## Sorted FALSE FALSE TRUE
##
## j.NH3.orig j.NH3.conv.fact dt.calc dt.diff ct mt
## Class numeric numeric numeric numeric numeric numeric
## Minimum -1420 2.96e-05 0.5 0 0.5 0.25
## Maximum 565000 2.96e-05 0.5 0 142 142
## Mean 11400 2.96e-05 0.5 0 71.2 71
## Unique (excld. NA) 1136 1 2 1 284 284
## Missing values 0 0 0 0 0 0
## Sorted FALSE TRUE FALSE TRUE FALSE FALSE
##
## cta bta flag.int rain.rate rain.cum wind.2m e.int
## Class numeric numeric character numeric numeric numeric numeric
## Minimum -17.6 -18.1 0 0 0.0314 -0.021
## Maximum 130 129 3.2 3.2 4.74 8.37
## Mean 57.6 57.1 <NA> 0.0225 0.439 1.21 0.168
## Unique (excld. NA) 568 568 1 3 4 568 1136
## Missing values 0 0 0 0 0 0 0
## Sorted FALSE FALSE TRUE FALSE FALSE FALSE FALSE
##
## e.cum e e.rel j.rel pub.info soil.type2
## Class numeric numeric numeric numeric logical logical
## Minimum -0.153 -0.153 -0.00154 -0.000423 <NA> <NA>
## Maximum 68.5 68.5 0.712 0.174 <NA> <NA>
## Mean 40.4 40.4 0.411 0.00343 <NA> <NA>
## Unique (excld. NA) 1136 1136 1136 1136 0 0
## Missing values 0 0 0 0 1136 1136
## Sorted FALSE FALSE FALSE FALSE <NA> <NA>
##
## exper2 rep2 acid meas.tech.orig meas.tech2 crop.orig
## Class logical logical logical character character character
## Minimum <NA> <NA> FALSE AGM micro met Grass
## Maximum <NA> <NA> FALSE EC micro met Grass
## Mean <NA> <NA> 0 TRUE <NA> <NA> <NA>
## Unique (excld. NA) 0 0 1 3 1 1
## Missing values 1136 1136 0 0 0 0
## Sorted <NA> <NA> TRUE FALSE TRUE TRUE
##
## man.source.orig app.method.orig app.method2 incorp.orig
## Class character character character character
## Minimum Cattle Broadcast bc None
## Maximum Cattle Broadcast bc Shallow
## Mean <NA> <NA> <NA> <NA>
## Unique (excld. NA) 1 1 1 2
## Missing values 0 0 0 0
## Sorted TRUE TRUE TRUE FALSE
##
## date.start first.row.int row.plot first.rows
## Class Date numeric numeric factor
## Minimum 2013-06-18 30 5 Plots 5 Emis. 30
## Maximum 2013-06-18 894 6 Plots 6 Emis. 894
## Mean <NA> 459 5.25 Plots 5 Emis. 314
## Unique (excld. NA) 1 4 2 4
## Missing values 0 0 0 0
## Sorted TRUE TRUE TRUE TRUE
##
## ggplotgroup
## Class numeric
## Minimum 1
## Maximum 1
## Mean 1
## Unique (excld. NA) 1
## Missing values 0
## Sorted TRUE
##