Submitted data error checks
0. Instructions for submitters
Submitters should use this file to check for problems with submitted data. Send either a list of problems or confirmation that everything looks OK to Sasha by email. Be sure to reference the dataset version and file creation date/time when doing so. These are:
## Version: 2.47## [1] "Date/time: 2024-04-04 14:52:01.537417"Each of these html files contains a summary of the data from a single submitted spreadsheet file. The html name is based on the name of the submitted file. Use the details below to check:
- Institute abbreviation, submitter and contributor names
- The plot location(s), using the map zoom and pan features if needed
- For problems in the first sections; “OK” means there are no problems in a particular section, “warning” is something that should be checked (but might be OK), “error” is a problem that needs to be addressed
- For numeric values outside the expected range in the “Value checks” section
- Variables with missing values–are there any missing that you thought you included?
- Plots of flux, cumulative emission over time, and final cumulative emission for strange patterns, unexpectedly high or low values
- Plots of weather data for appropriate differences between plots and expected diurnal or other patterns
- Plots of manure and application data for correct values
Finally, the numeric summary at the end might provide details that can help in pinpointing problems, but typically does not need to be checked.
1. Submitter
| inst.abbrev | submitter | version | date |
|---|---|---|---|
| AU | Pedersen, Johanna | 1 | 2023-11-09 |
2. Contributors
| contributor | institute |
|---|---|
| Pedersen, Johanna | Aarhus University |
| Feilberg, Anders | Aarhus University |
3. File and directory names
## [1] "../../data-submitted/03/AU"## [1] "../../data-submitted/03/AU/ALFAM2_template_7.0_22HIJK_240208.xlsx"4. Location
5.Keys and codes
Codes in Treatments sheet
## OK## OKCodes in Plots sheet
## OK## OKCodes in Emission sheet
## OK## OKCode merge check (matching project, experiment, field, plot, treatment)
## OK## OK## OK## OK## OK6. Publication info
Check for missing codes
## OK## OKComplete citations given
## OK## OK7. Emission sheet
Duplicated intervals
## OKMissing incorporation time
## OKDelay after application
## OKMissing or double interval number
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OKMissing time between intervals
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OK
## OKMeasurement method and units
Measurement technique:
| Method | Frequency |
|---|---|
| Wind tunnel | 3230 |
Measurement technique classification:
| Classification | Frequency |
|---|---|
| wt | 3230 |
Emission units and conversion factors.
| Original unit | Conversion factor applied | Final unit |
|---|---|---|
| kg N/ha-hr | 1 | kg N/ha-hr |
7. Value checks
Check to see if submitted values are within a reasonable range.
Weather
## wind : OK
## rain.rate : OK
## air.temp : OK
## soil.temp : No values to check.
## soil.temp.surf : No values to check.
## air.temp.z : OK
## wind.z : No values to check.Manure and application
## man.stor : No values to check.
## man.dm : OK
## man.vs : No values to check.
## man.tkn : OK
## man.tan : OK
## man.tic : No values to check.
## man.ua : No values to check.
## man.vfa : OK
## man.ph : OK
## app.rate : OK
## crop.z : OKEmission
## j.NH3 : OK
## e.int : OK
## e.rel : OK8. Missing values
Check for missing values.
All variables
## Some values missing:
## Table below has number of missing observations by variable:
## pub.id meas.tech.det oc soil.type soil.water.v
## 3230 3230 3230 3230 3230
## man.bed man.trt1 man.trt2 man.trt3 man.stor
## 3230 518 1595 2672 3230
## man.vs man.tic man.ua time.incorp man.area
## 3230 3230 3230 3230 3230
## dist.inj furrow.z furrow.w crop.area lai
## 3230 3230 3230 3230 3230
## notes.plot bg.dl pH.surf soil.temp soil.temp.z
## 3136 3230 3230 3230 3230
## soil.temp.surf rad wind.z MOL ustar
## 3230 3230 3230 3230 3230
## rl air.pres air.pres.unit rh wind.loc
## 3230 3230 3230 3230 3230
## far.loc notes.int wind.2m pub.info soil.type2
## 3230 3229 3230 3230 3230
## exper2 rep2
## 3230 3230Application method and measurement method
## OK## OK9. Plots
Calculated cumulative emission
Cumulative emission. Missing values imputed (linear interpolation). Numeric labels show position of data in data file: row in the “Plots” sheet and first row in the “Emission” sheet. Labels in center of the first plot have measurement method, manure source, and application method. The same emission data are plotted a few different ways to facilitate checking for problems, e.g., comparing plot to each other or checking application dates. The same colors should be be used for particular field plots throughout this section.
Final cumulative emission
## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
Relative versus absolute emission
Flux
Weather data
Manure and application
10. dfsumm summary
Plot-level data
##
## 36 rows and 175 columns
## 36 unique rows
## pub.id proj exper
## Class logical character character
## Minimum <NA> MAG 22H
## Maximum <NA> MAG 22K
## Mean <NA> <NA> <NA>
## Unique (excld. NA) 0 1 4
## Missing values 36 0 0
## Sorted <NA> TRUE TRUE
##
## cpmid
## Class character
## Minimum D:1.I:AU.Pr:MAG.F:../../data-submitted/03/AU/ALFAM2_template_7.0_22HIJK_240208.xlsx.E:22H.F:A.P:1.T:Reference.R:1.R2:.T:2022-06-08 12:56:00.M:Wind tunnelNA
## Maximum D:1.I:AU.Pr:MAG.F:../../data-submitted/03/AU/ALFAM2_template_7.0_22HIJK_240208.xlsx.E:22K.F:A.P:9.T:Reference.R:3.R2:.T:2022-06-29 13:17:00.M:Wind tunnelNA
## Mean <NA>
## Unique (excld. NA) 36
## Missing values 0
## Sorted TRUE
##
## field plot rep plot.area lat long
## Class character numeric numeric numeric numeric numeric
## Minimum A 1 1 0.2 56.5 9.57
## Maximum A 12 3 0.2 56.5 9.57
## Mean <NA> 6.33 2 0.2 56.5 9.57
## Unique (excld. NA) 1 9 3 1 1 1
## Missing values 0 0 0 0 0 0
## Sorted TRUE FALSE FALSE TRUE TRUE TRUE
##
## country topo soil.samp.z clay silt sand
## Class character character character numeric numeric numeric
## Minimum DK Flat 0-5 cm 9 24 65
## Maximum DK Flat 0-5 cm 9 24 65
## Mean <NA> <NA> <NA> 9 24 65
## Unique (excld. NA) 1 1 1 1 1 1
## Missing values 0 0 0 0 0 0
## Sorted TRUE TRUE TRUE TRUE TRUE TRUE
##
## oc soil.type soil.water soil.water.v soil.moist soil.ph
## Class logical logical numeric logical character numeric
## Minimum <NA> <NA> 0.19 <NA> Dry 5.8
## Maximum <NA> <NA> 0.31 <NA> Dry 5.8
## Mean <NA> <NA> 0.248 <NA> <NA> 5.8
## Unique (excld. NA) 0 0 4 0 1 1
## Missing values 36 36 0 36 0 0
## Sorted <NA> <NA> FALSE <NA> TRUE TRUE
##
## soil.dens crop.res till man.source
## Class numeric character character character
## Minimum 1.09 Yes No mix
## Maximum 1.09 Yes No pig
## Mean 1.09 <NA> <NA> <NA>
## Unique (excld. NA) 1 1 1 2
## Missing values 0 0 0 0
## Sorted TRUE TRUE TRUE FALSE
##
## man.source.det
## Class character
## Minimum mix of slurry co-digested with other agricultural residues
## Maximum mix of slurry co-digested with other agricultural residues
## Mean <NA>
## Unique (excld. NA) 1
## Missing values 0
## Sorted TRUE
##
## man.bed man.con man.trt1
## Class logical character character
## Minimum <NA> Liquid Anaerobic digestion
## Maximum <NA> Slurry Mechanical separation
## Mean <NA> <NA> <NA>
## Unique (excld. NA) 0 2 2
## Missing values 36 0 6
## Sorted <NA> FALSE FALSE
##
## man.trt2 man.trt3 man.stor man.dm man.vs
## Class character character logical numeric logical
## Minimum Mechanical separation Plasma <NA> 2 <NA>
## Maximum Plasma Plasma <NA> 6.3 <NA>
## Mean <NA> <NA> <NA> 3.62 <NA>
## Unique (excld. NA) 2 1 0 8 0
## Missing values 18 30 36 0 36
## Sorted FALSE TRUE <NA> FALSE <NA>
##
## man.tkn man.tan man.tic man.ua man.vfa man.ph
## Class numeric numeric logical logical numeric numeric
## Minimum 1.87 1.04 <NA> <NA> 0.38 4.8
## Maximum 4.11 2.08 <NA> <NA> 9.48 8.4
## Mean 2.75 1.67 <NA> <NA> 3.78 6.78
## Unique (excld. NA) 12 11 0 0 12 11
## Missing values 0 0 36 36 0 0
## Sorted FALSE FALSE <NA> <NA> FALSE FALSE
##
## app.start app.end app.method app.rate
## Class POSIXct, POSIXt POSIXct, POSIXt character numeric
## Minimum 2022-06-08 12:56:00 2022-06-15 06:59:00 bsth 30
## Maximum 2022-06-29 14:37:00 2022-07-06 07:09:00 bsth 30
## Mean 2022-06-19 01:07:35 2022-06-25 20:19:41 <NA> 30
## Unique (excld. NA) 36 36 1 1
## Missing values 0 0 0 0
## Sorted FALSE FALSE TRUE TRUE
##
## app.rate.unit incorp time.incorp man.area dist.inj
## Class character character numeric logical logical
## Minimum t/ha none <NA> <NA> <NA>
## Maximum t/ha none <NA> <NA> <NA>
## Mean <NA> <NA> <NA> <NA> <NA>
## Unique (excld. NA) 1 1 0 0 0
## Missing values 0 0 36 36 36
## Sorted TRUE TRUE <NA> <NA> <NA>
##
## furrow.z furrow.w crop crop.z crop.area lai
## Class logical logical character numeric numeric logical
## Minimum <NA> <NA> grass 5 <NA> <NA>
## Maximum <NA> <NA> grass 40 <NA> <NA>
## Mean <NA> <NA> <NA> 22.5 <NA> <NA>
## Unique (excld. NA) 0 0 1 36 0 0
## Missing values 36 36 0 0 36 36
## Sorted <NA> <NA> TRUE FALSE <NA> <NA>
##
## notes.plot row.in.file.plot institute sub.period
## Class character numeric character numeric
## Minimum . 5 AU 3
## Maximum . 40 AU 3
## Mean <NA> 22.5 <NA> 3
## Unique (excld. NA) 1 36 1 1
## Missing values 35 0 0 0
## Sorted TRUE FALSE TRUE TRUE
##
## file
## Class character
## Minimum ../../data-submitted/03/AU/ALFAM2_template_7.0_22HIJK_240208.xlsx
## Maximum ../../data-submitted/03/AU/ALFAM2_template_7.0_22HIJK_240208.xlsx
## Mean <NA>
## Unique (excld. NA) 1
## Missing values 0
## Sorted TRUE
##
## treat meas.tech meas.tech.det app.start.orig
## Class character character logical POSIXct, POSIXt
## Minimum Plasma Wind tunnel <NA> 2022-06-08 12:56:00
## Maximum Separated Wind tunnel <NA> 2022-06-29 14:37:00
## Mean <NA> <NA> <NA> 2022-06-19 01:07:35
## Unique (excld. NA) 3 1 0 36
## Missing values 0 0 36 0
## Sorted FALSE TRUE <NA> FALSE
##
## app.end.orig
## Class POSIXct, POSIXt
## Minimum 2022-06-15 06:59:00
## Maximum 2022-07-06 07:09:00
## Mean 2022-06-25 20:19:41
## Unique (excld. NA) 36
## Missing values 0
## Sorted FALSE
##
## cpid
## Class character
## Minimum D:1.I:AU.Pr:MAG.F:../../data-submitted/03/AU/ALFAM2_template_7.0_22HIJK_240208.xlsx.E:22H.F:A.P:1.T:Reference.R:1.R2:.T:2022-06-08 12:56:00
## Maximum D:1.I:AU.Pr:MAG.F:../../data-submitted/03/AU/ALFAM2_template_7.0_22HIJK_240208.xlsx.E:22K.F:A.P:9.T:Reference.R:3.R2:.T:2022-06-29 13:17:00
## Mean <NA>
## Unique (excld. NA) 36
## Missing values 0
## Sorted TRUE
##
## ceid flag.plot submitter tan.app
## Class character character character numeric
## Minimum D:1.I:AU.Pr:MAG.E:22H Pedersen, Johanna 31.2
## Maximum D:1.I:AU.Pr:MAG.E:22K Pedersen, Johanna 62.4
## Mean <NA> <NA> <NA> 50.1
## Unique (excld. NA) 4 1 1 11
## Missing values 0 0 0 0
## Sorted TRUE TRUE TRUE FALSE
##
## e.1 e.4 e.6 e.12 e.24 e.48 e.72
## Class numeric numeric numeric numeric numeric numeric numeric
## Minimum <NA> 0.11 0.167 0.19 0.369 0.586 0.733
## Maximum <NA> 8.92 11.9 16.9 21.6 24.8 26.7
## Mean <NA> 2.18 2.95 4.22 5.93 7.59 8.31
## Unique (excld. NA) 0 36 36 36 36 36 36
## Missing values 36 0 0 0 0 0 0
## Sorted <NA> FALSE FALSE FALSE FALSE FALSE FALSE
##
## e.96 e.168 e.final e.tot e.cum.1 e.cum.4 e.cum.6
## Class numeric numeric numeric numeric numeric numeric numeric
## Minimum 0.889 <NA> 1.18 1.18 <NA> 0.11 0.167
## Maximum 27.9 <NA> 29.8 29.8 <NA> 8.92 11.9
## Mean 8.76 <NA> 9.49 9.49 <NA> 2.18 2.95
## Unique (excld. NA) 36 0 36 36 0 36 36
## Missing values 0 36 0 0 36 0 0
## Sorted FALSE <NA> FALSE FALSE <NA> FALSE FALSE
##
## e.cum.12 e.cum.24 e.cum.48 e.cum.72 e.cum.96 e.cum.168
## Class numeric numeric numeric numeric numeric numeric
## Minimum 0.19 0.369 0.586 0.733 0.889 <NA>
## Maximum 16.9 21.6 24.8 26.7 27.9 <NA>
## Mean 4.22 5.93 7.59 8.31 8.76 <NA>
## Unique (excld. NA) 36 36 36 36 36 0
## Missing values 0 0 0 0 0 36
## Sorted FALSE FALSE FALSE FALSE FALSE <NA>
##
## e.cum.final e.cum.tot e.rel.1 e.rel.4 e.rel.6 e.rel.12
## Class numeric numeric numeric numeric numeric numeric
## Minimum 1.18 1.18 <NA> 0.00202 0.00378 0.00578
## Maximum 29.8 29.8 <NA> 0.156 0.209 0.296
## Mean 9.49 9.49 <NA> 0.0402 0.0543 0.0772
## Unique (excld. NA) 36 36 0 36 36 36
## Missing values 0 0 36 0 0 0
## Sorted FALSE FALSE <NA> FALSE FALSE FALSE
##
## e.rel.24 e.rel.48 e.rel.72 e.rel.96 e.rel.168 e.rel.final
## Class numeric numeric numeric numeric numeric numeric
## Minimum 0.00984 0.0188 0.0235 0.0285 <NA> 0.0378
## Maximum 0.379 0.435 0.469 0.489 <NA> 0.522
## Mean 0.109 0.141 0.154 0.163 <NA> 0.176
## Unique (excld. NA) 36 36 36 36 0 36
## Missing values 0 0 0 0 36 0
## Sorted FALSE FALSE FALSE FALSE <NA> FALSE
##
## e.rel.tot rain.1 rain.4 rain.6 rain.12 rain.24 rain.48
## Class numeric numeric numeric numeric numeric numeric numeric
## Minimum 0.0378 <NA> 0 0 0 0 0
## Maximum 0.522 <NA> 0 0 0 0 0
## Mean 0.176 <NA> 0 0 0 0 0
## Unique (excld. NA) 36 0 1 1 1 1 1
## Missing values 0 36 0 0 0 0 0
## Sorted FALSE <NA> TRUE TRUE TRUE TRUE TRUE
##
## rain.72 rain.96 rain.168 rain.final rain.tot air.temp.1
## Class numeric numeric numeric numeric numeric numeric
## Minimum 0 0 <NA> 0 0 <NA>
## Maximum 0 0 <NA> 0 0 <NA>
## Mean 0 0 <NA> 0 0 <NA>
## Unique (excld. NA) 1 1 0 1 1 0
## Missing values 0 0 36 0 0 36
## Sorted TRUE TRUE <NA> TRUE TRUE <NA>
##
## air.temp.4 air.temp.6 air.temp.12 air.temp.24 air.temp.48
## Class numeric numeric numeric numeric numeric
## Minimum 15 15 14.4 13.3 14.2
## Maximum 22.1 22 20.4 18.5 19.1
## Mean 17.2 17.2 16.1 15 16.1
## Unique (excld. NA) 13 21 27 33 34
## Missing values 0 0 0 0 0
## Sorted FALSE FALSE FALSE FALSE FALSE
##
## air.temp.72 air.temp.96 air.temp.168 air.temp.mn wind.1
## Class numeric numeric numeric numeric numeric
## Minimum 14.4 14.5 13.8 13.8 <NA>
## Maximum 18.7 19.2 17.8 17.8 <NA>
## Mean 16.4 16.6 15.5 15.5 <NA>
## Unique (excld. NA) 36 36 36 36 0
## Missing values 0 0 0 0 36
## Sorted FALSE FALSE FALSE FALSE <NA>
##
## wind.4 wind.6 wind.12 wind.24 wind.48 wind.72 wind.96
## Class numeric numeric numeric numeric numeric numeric numeric
## Minimum 0.2 0.2 0.2 0.2 0.2 0.2 0.2
## Maximum 0.2 0.2 0.2 0.2 0.2 0.2 0.2
## Mean 0.2 0.2 0.2 0.2 0.2 0.2 0.2
## Unique (excld. NA) 2 2 2 2 2 2 2
## Missing values 0 0 0 0 0 0 0
## Sorted FALSE FALSE FALSE FALSE FALSE FALSE FALSE
##
## wind.168 wind.mn rain.rate.1 rain.rate.4 rain.rate.6
## Class numeric numeric numeric numeric numeric
## Minimum 0.2 0.2 <NA> 0 0
## Maximum 0.2 0.2 <NA> 0 0
## Mean 0.2 0.2 <NA> 0 0
## Unique (excld. NA) 2 2 0 1 1
## Missing values 0 0 36 0 0
## Sorted FALSE FALSE <NA> TRUE TRUE
##
## rain.rate.12 rain.rate.24 rain.rate.48 rain.rate.72
## Class numeric numeric numeric numeric
## Minimum 0 0 0 0
## Maximum 0 0 0 0
## Mean 0 0 0 0
## Unique (excld. NA) 1 1 1 1
## Missing values 0 0 0 0
## Sorted TRUE TRUE TRUE TRUE
##
## rain.rate.96 rain.rate.168 rain.rate.mn
## Class numeric numeric numeric
## Minimum 0 0 0
## Maximum 0 0 0
## Mean 0 0 0
## Unique (excld. NA) 1 1 1
## Missing values 0 0 0
## Sorted TRUE TRUE TRUE
##
## first.row.in.file.int last.row.in.file.int n.ints dt1
## Class numeric numeric integer numeric
## Minimum 5 98 80 1.72
## Maximum 3140 3230 94 1.73
## Mean 1570 1660 89.7 1.73
## Unique (excld. NA) 36 36 6 3
## Missing values 0 0 0 0
## Sorted TRUE TRUE FALSE FALSE
##
## j.rel1 j.NH31 dt.min dt.max ct.min ct.max
## Class numeric numeric numeric numeric numeric numeric
## Minimum 6.31e-05 0.00373 0.133 1.73 1.72 159
## Maximum 0.0433 2.47 1.72 26 1.73 166
## Mean 0.0109 0.584 1.64 9.58 1.73 163
## Unique (excld. NA) 36 36 5 8 3 8
## Missing values 0 0 0 0 0 0
## Sorted FALSE FALSE FALSE FALSE FALSE FALSE
##
## t.start.p t.end.p air.temp.z
## Class POSIXct, POSIXt POSIXct, POSIXt numeric
## Minimum 2022-06-08 12:56:00 2022-06-15 05:15:00 2
## Maximum 2022-06-29 14:37:00 2022-07-06 05:25:00 2
## Mean 2022-06-19 01:07:35 2022-06-25 18:35:41 2
## Unique (excld. NA) 36 36 1
## Missing values 0 0 0
## Sorted FALSE FALSE TRUE
##
## soil.temp.z wind.z wind.loc far.loc pub.info soil.type2
## Class logical logical logical logical logical logical
## Minimum <NA> <NA> <NA> <NA> <NA> <NA>
## Maximum <NA> <NA> <NA> <NA> <NA> <NA>
## Mean <NA> <NA> <NA> <NA> <NA> <NA>
## Unique (excld. NA) 0 0 0 0 0 0
## Missing values 36 36 36 36 36 36
## Sorted <NA> <NA> <NA> <NA> <NA> <NA>
##
## exper2 rep2 acid meas.tech.orig meas.tech2 crop.orig
## Class logical logical logical character character character
## Minimum <NA> <NA> FALSE Wind tunnel wt Grass
## Maximum <NA> <NA> FALSE Wind tunnel wt Grass
## Mean <NA> <NA> 0 TRUE <NA> <NA> <NA>
## Unique (excld. NA) 0 0 1 1 1 1
## Missing values 36 36 0 0 0 0
## Sorted <NA> <NA> TRUE TRUE TRUE TRUE
##
## man.source.orig app.method.orig app.method2
## Class character character character
## Minimum Mix Band spread or trailing hose bsth
## Maximum Pig Band spread or trailing hose bsth
## Mean <NA> <NA> <NA>
## Unique (excld. NA) 2 1 1
## Missing values 0 0 0
## Sorted FALSE TRUE TRUE
##
## incorp.orig date.start
## Class character Date
## Minimum None 2022-06-08
## Maximum None 2022-06-29
## Mean <NA> <NA>
## Unique (excld. NA) 1 4
## Missing values 0 0
## Sorted TRUE TRUE
## Interval-level emission data
##
## 3230 rows and 138 columns
## 3230 unique rows
## cpmid
## Class character
## Minimum D:1.I:AU.Pr:MAG.F:../../data-submitted/03/AU/ALFAM2_template_7.0_22HIJK_240208.xlsx.E:22H.F:A.P:1.T:Reference.R:1.R2:.T:2022-06-08 12:56:00.M:Wind tunnelNA
## Maximum D:1.I:AU.Pr:MAG.F:../../data-submitted/03/AU/ALFAM2_template_7.0_22HIJK_240208.xlsx.E:22K.F:A.P:9.T:Reference.R:3.R2:.T:2022-06-29 13:17:00.M:Wind tunnelNA
## Mean <NA>
## Unique (excld. NA) 36
## Missing values 0
## Sorted TRUE
##
## pub.id proj exper field plot rep
## Class logical character character character numeric numeric
## Minimum <NA> MAG 22H A 1 1
## Maximum <NA> MAG 22K A 12 3
## Mean <NA> <NA> <NA> <NA> 6.32 2
## Unique (excld. NA) 0 1 4 1 9 3
## Missing values 3230 0 0 0 0 0
## Sorted <NA> TRUE TRUE TRUE FALSE FALSE
##
## treat meas.tech meas.tech.det plot.area lat
## Class character character logical numeric numeric
## Minimum Plasma Wind tunnel <NA> 0.2 56.5
## Maximum Separated Wind tunnel <NA> 0.2 56.5
## Mean <NA> <NA> <NA> 0.2 56.5
## Unique (excld. NA) 3 1 0 1 1
## Missing values 0 0 3230 0 0
## Sorted FALSE TRUE <NA> TRUE TRUE
##
## long country topo soil.samp.z clay silt
## Class numeric character character character numeric numeric
## Minimum 9.57 DK Flat 0-5 cm 9 24
## Maximum 9.57 DK Flat 0-5 cm 9 24
## Mean 9.57 <NA> <NA> <NA> 9 24
## Unique (excld. NA) 1 1 1 1 1 1
## Missing values 0 0 0 0 0 0
## Sorted TRUE TRUE TRUE TRUE TRUE TRUE
##
## sand oc soil.type soil.water soil.water.v soil.moist
## Class numeric logical logical numeric logical character
## Minimum 65 <NA> <NA> 0.19 <NA> Dry
## Maximum 65 <NA> <NA> 0.31 <NA> Dry
## Mean 65 <NA> <NA> 0.249 <NA> <NA>
## Unique (excld. NA) 1 0 0 4 0 1
## Missing values 0 3230 3230 0 3230 0
## Sorted TRUE <NA> <NA> FALSE <NA> TRUE
##
## soil.ph soil.dens crop.res till man.source
## Class numeric numeric character character character
## Minimum 5.8 1.09 Yes No mix
## Maximum 5.8 1.09 Yes No pig
## Mean 5.8 1.09 <NA> <NA> <NA>
## Unique (excld. NA) 1 1 1 1 2
## Missing values 0 0 0 0 0
## Sorted TRUE TRUE TRUE TRUE FALSE
##
## man.source.det
## Class character
## Minimum mix of slurry co-digested with other agricultural residues
## Maximum mix of slurry co-digested with other agricultural residues
## Mean <NA>
## Unique (excld. NA) 1
## Missing values 0
## Sorted TRUE
##
## man.bed man.con man.trt1
## Class logical character character
## Minimum <NA> Liquid Anaerobic digestion
## Maximum <NA> Slurry Mechanical separation
## Mean <NA> <NA> <NA>
## Unique (excld. NA) 0 2 2
## Missing values 3230 0 518
## Sorted <NA> FALSE FALSE
##
## man.trt2 man.trt3 man.stor man.dm man.vs
## Class character character logical numeric logical
## Minimum Mechanical separation Plasma <NA> 2 <NA>
## Maximum Plasma Plasma <NA> 6.3 <NA>
## Mean <NA> <NA> <NA> 3.66 <NA>
## Unique (excld. NA) 2 1 0 8 0
## Missing values 1595 2672 3230 0 3230
## Sorted FALSE TRUE <NA> FALSE <NA>
##
## man.tkn man.tan man.tic man.ua man.vfa man.ph
## Class numeric numeric logical logical numeric numeric
## Minimum 1.87 1.04 <NA> <NA> 0.38 4.8
## Maximum 4.11 2.08 <NA> <NA> 9.48 8.4
## Mean 2.77 1.68 <NA> <NA> 3.64 6.8
## Unique (excld. NA) 12 11 0 0 12 11
## Missing values 0 0 3230 3230 0 0
## Sorted FALSE FALSE <NA> <NA> FALSE FALSE
##
## app.start app.end app.method app.rate
## Class POSIXct, POSIXt POSIXct, POSIXt character numeric
## Minimum 2022-06-08 12:56:00 2022-06-15 06:59:00 bsth 30
## Maximum 2022-06-29 14:37:00 2022-07-06 07:09:00 bsth 30
## Mean 2022-06-19 02:49:01 2022-06-25 21:59:59 <NA> 30
## Unique (excld. NA) 36 36 1 1
## Missing values 0 0 0 0
## Sorted FALSE FALSE TRUE TRUE
##
## app.rate.unit incorp time.incorp man.area dist.inj
## Class character character numeric logical logical
## Minimum t/ha none <NA> <NA> <NA>
## Maximum t/ha none <NA> <NA> <NA>
## Mean <NA> <NA> <NA> <NA> <NA>
## Unique (excld. NA) 1 1 0 0 0
## Missing values 0 0 3230 3230 3230
## Sorted TRUE TRUE <NA> <NA> <NA>
##
## furrow.z furrow.w crop crop.z crop.area lai
## Class logical logical character numeric numeric logical
## Minimum <NA> <NA> grass 5 <NA> <NA>
## Maximum <NA> <NA> grass 40 <NA> <NA>
## Mean <NA> <NA> <NA> 22.6 <NA> <NA>
## Unique (excld. NA) 0 0 1 36 0 0
## Missing values 3230 3230 0 0 3230 3230
## Sorted <NA> <NA> TRUE FALSE <NA> <NA>
##
## notes.plot row.in.file.plot institute sub.period
## Class character numeric character numeric
## Minimum . 5 AU 3
## Maximum . 40 AU 3
## Mean <NA> 22.6 <NA> 3
## Unique (excld. NA) 1 36 1 1
## Missing values 3136 0 0 0
## Sorted TRUE FALSE TRUE TRUE
##
## file
## Class character
## Minimum ../../data-submitted/03/AU/ALFAM2_template_7.0_22HIJK_240208.xlsx
## Maximum ../../data-submitted/03/AU/ALFAM2_template_7.0_22HIJK_240208.xlsx
## Mean <NA>
## Unique (excld. NA) 1
## Missing values 0
## Sorted TRUE
##
## app.start.orig app.end.orig
## Class POSIXct, POSIXt POSIXct, POSIXt
## Minimum 2022-06-08 12:56:00 2022-06-15 06:59:00
## Maximum 2022-06-29 14:37:00 2022-07-06 07:09:00
## Mean 2022-06-19 02:49:01 2022-06-25 21:59:59
## Unique (excld. NA) 36 36
## Missing values 0 0
## Sorted FALSE FALSE
##
## cpid
## Class character
## Minimum D:1.I:AU.Pr:MAG.F:../../data-submitted/03/AU/ALFAM2_template_7.0_22HIJK_240208.xlsx.E:22H.F:A.P:1.T:Reference.R:1.R2:.T:2022-06-08 12:56:00
## Maximum D:1.I:AU.Pr:MAG.F:../../data-submitted/03/AU/ALFAM2_template_7.0_22HIJK_240208.xlsx.E:22K.F:A.P:9.T:Reference.R:3.R2:.T:2022-06-29 13:17:00
## Mean <NA>
## Unique (excld. NA) 36
## Missing values 0
## Sorted TRUE
##
## ceid flag.plot submitter tan.app
## Class character character character numeric
## Minimum D:1.I:AU.Pr:MAG.E:22H Pedersen, Johanna 31.2
## Maximum D:1.I:AU.Pr:MAG.E:22K Pedersen, Johanna 62.4
## Mean <NA> <NA> <NA> 50.4
## Unique (excld. NA) 4 1 1 11
## Missing values 0 0 0 0
## Sorted TRUE TRUE TRUE FALSE
##
## interval t.start t.end dt
## Class numeric POSIXct, POSIXt POSIXct, POSIXt numeric
## Minimum 1 2022-06-08 12:56:00 2022-06-08 14:40:00 0.133
## Maximum 94 2022-07-06 05:25:00 2022-07-06 07:09:00 26
## Mean 45.5 2022-06-22 11:20:00 2022-06-22 13:09:09 1.82
## Unique (excld. NA) 94 3229 3229 14
## Missing values 0 0 0 0
## Sorted FALSE FALSE FALSE FALSE
##
## bg.dl bg.val bg.unit j.NH3 j.NH3.unit pH.surf
## Class logical numeric character numeric character logical
## Minimum <NA> 0.000928 ppm -0.0574 kg N/ha-hr <NA>
## Maximum <NA> 0.0699 ppm 2.47 kg N/ha-hr <NA>
## Mean <NA> 0.00956 <NA> 0.0601 <NA> <NA>
## Unique (excld. NA) 0 361 1 3230 1 0
## Missing values 3230 0 0 0 0 3230
## Sorted <NA> FALSE TRUE FALSE TRUE <NA>
##
## air.temp air.temp.z soil.temp soil.temp.z soil.temp.surf
## Class numeric numeric numeric logical logical
## Minimum 9.2 2 <NA> <NA> <NA>
## Maximum 26.6 2 <NA> <NA> <NA>
## Mean 15.6 2 <NA> <NA> <NA>
## Unique (excld. NA) 154 1 0 0 0
## Missing values 0 0 3230 3230 3230
## Sorted FALSE TRUE <NA> <NA> <NA>
##
## rad wind wind.z MOL ustar rl air.pres
## Class logical numeric logical logical logical logical logical
## Minimum <NA> 0.2 <NA> <NA> <NA> <NA> <NA>
## Maximum <NA> 0.2 <NA> <NA> <NA> <NA> <NA>
## Mean <NA> 0.2 <NA> <NA> <NA> <NA> <NA>
## Unique (excld. NA) 0 1 0 0 0 0 0
## Missing values 3230 0 3230 3230 3230 3230 3230
## Sorted <NA> TRUE <NA> <NA> <NA> <NA> <NA>
##
## air.pres.unit rain rh wind.loc far.loc notes.int
## Class logical numeric logical logical logical character
## Minimum <NA> 0 <NA> <NA> <NA> .
## Maximum <NA> 0 <NA> <NA> <NA> .
## Mean <NA> 0 <NA> <NA> <NA> <NA>
## Unique (excld. NA) 0 1 0 0 0 1
## Missing values 3230 0 3230 3230 3230 3229
## Sorted <NA> TRUE <NA> <NA> <NA> TRUE
##
## row.in.file.int j.type t.start.orig
## Class numeric character POSIXct, POSIXt
## Minimum 5 emission rate 2022-06-08 12:56:00
## Maximum 3230 emission rate 2022-07-06 05:25:00
## Mean 1620 <NA> 2022-06-22 11:20:00
## Unique (excld. NA) 3230 1 3229
## Missing values 0 0 0
## Sorted TRUE TRUE FALSE
##
## t.end.orig j.NH3.unit.orig j.NH3.orig
## Class POSIXct, POSIXt character numeric
## Minimum 2022-06-08 12:56:00 kg N/ha-hr -0.0574
## Maximum 2022-07-06 05:25:00 kg N/ha-hr 2.47
## Mean 2022-06-22 11:20:00 <NA> 0.0601
## Unique (excld. NA) 3229 1 3230
## Missing values 0 0 0
## Sorted FALSE TRUE FALSE
##
## j.NH3.conv.fact dt.calc dt.diff ct mt cta
## Class numeric numeric numeric numeric numeric numeric
## Minimum 1 0.133 -3.55e-15 1.72 0.858 1.72
## Maximum 1 26 3.55e-15 166 165 166
## Mean 1 1.82 -2.29e-15 82.3 81.4 82.3
## Unique (excld. NA) 1 12 7 456 483 248
## Missing values 0 0 0 0 0 0
## Sorted TRUE FALSE FALSE FALSE FALSE FALSE
##
## bta flag.int rain.rate rain.cum wind.2m e.int e.cum
## Class numeric character numeric numeric numeric numeric numeric
## Minimum 0 0 0 <NA> -0.0995 0.00647
## Maximum 165 0 0 <NA> 4.28 29.8
## Mean 80.5 <NA> 0 0 <NA> 0.106 7.99
## Unique (excld. NA) 246 1 1 1 0 3230 3230
## Missing values 0 0 0 0 3230 0 0
## Sorted FALSE TRUE TRUE TRUE <NA> FALSE FALSE
##
## e e.rel j.rel pub.info soil.type2 exper2
## Class numeric numeric numeric logical logical logical
## Minimum 0.00647 0.000109 -0.000991 <NA> <NA> <NA>
## Maximum 29.8 0.522 0.0433 <NA> <NA> <NA>
## Mean 7.99 0.147 0.00112 <NA> <NA> <NA>
## Unique (excld. NA) 3230 3230 3230 0 0 0
## Missing values 0 0 0 3230 3230 3230
## Sorted FALSE FALSE FALSE <NA> <NA> <NA>
##
## rep2 acid meas.tech.orig meas.tech2 crop.orig
## Class logical logical character character character
## Minimum <NA> FALSE Wind tunnel wt Grass
## Maximum <NA> FALSE Wind tunnel wt Grass
## Mean <NA> 0 TRUE <NA> <NA> <NA>
## Unique (excld. NA) 0 1 1 1 1
## Missing values 3230 0 0 0 0
## Sorted <NA> TRUE TRUE TRUE TRUE
##
## man.source.orig app.method.orig app.method2
## Class character character character
## Minimum Mix Band spread or trailing hose bsth
## Maximum Pig Band spread or trailing hose bsth
## Mean <NA> <NA> <NA>
## Unique (excld. NA) 2 1 1
## Missing values 0 0 0
## Sorted FALSE TRUE TRUE
##
## incorp.orig date.start first.row.int row.plot
## Class character Date numeric numeric
## Minimum None 2022-06-08 5 5
## Maximum None 2022-06-08 3140 40
## Mean <NA> <NA> 1570 22.6
## Unique (excld. NA) 1 1 36 36
## Missing values 0 0 0 0
## Sorted TRUE TRUE TRUE FALSE
##
## first.rows ggplotgroup
## Class factor factor
## Minimum Plots 10 Emis. 661 (4.96,10.8]
## Maximum Plots 9 Emis. 567 (34.2,40]
## Mean Plots 28 Emis. 2222 (22.5,28.3]
## Unique (excld. NA) 36 6
## Missing values 0 0
## Sorted FALSE FALSE
##